PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g003300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34462.7 Da    PI: 4.891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g003300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1860113356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  Csa11g003300.1  60 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 113
                     45578899*********************************************9 PP

2HD-ZIP_I/II128.92.1e-4159151193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy  Lk++yd+l+++ ++L++++++L +e+++
  Csa11g003300.1  59 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGILKSQYDSLRHNFDSLRRDNDSLLQEISK 151
                     69*************************************************************************************999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1848117IPR009057Homeodomain-like
PROSITE profilePS5007116.81155115IPR001356Homeobox domain
SMARTSM003891.5E-1658119IPR001356Homeobox domain
PfamPF000461.5E-1560113IPR001356Homeobox domain
CDDcd000866.62E-1660116No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1963122IPR009057Homeodomain-like
PRINTSPR000317.0E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000317.0E-695111IPR000047Helix-turn-helix motif
PfamPF021832.4E-16115154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYEED ATLIEEYSGN HNHHMGLSEK  60
KRRLRVDQVK ALEKNFELEN KLEPERKTKL AQELGLQPRQ VAVWFQNRRA RWKTKQLEKD  120
YGILKSQYDS LRHNFDSLRR DNDSLLQEIS KIKATINGEE DNNKATTESV KREEVVSLPE  180
SFHKTDSTPS SPPQFLEHST GFNYRRSFTD DLRDLLPNST AVVGDAGYSD SCDSSAVLNE  240
ETSSDNGRLT PPSTVAGGSF LQFVKTEQRE DHDDFLSGEE ACGFFSDEQP PSLHWYSASD  300
HWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010437140.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
SwissprotQ940J10.0ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLR0F6G20.0R0F6G2_9BRAS; Uncharacterized protein
STRINGAT4G40060.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.10.0homeobox protein 16